Archive

2024-06-25     Nature Communications-2024 PLMSearch：Protein language model powers accurate and fast sequence search for remote homology 2024-06-13     eLife-2024 Sensitive remote homology search by local alignment of small positional embeddings from protein language models 2024-05-29     Bioinformatics-2024 Embedding-based alignment：combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone 2024-04-30     Nature Biotechnology-2024 Protein remote homology detection and structural alignment using deep learning 2024-04-27     Fast protein structure searching using structure graph embeddings 2024-04-04     ICLR-2023 SaProt：Protein Language Modeling with Structure-aware Vocabulary 2024-02-12     Nature Biotechnology-2023 Fast and accurate protein structure search with FoldseekFast and accurate protein structure search with Foldseek 2024-02-05     ICML-2021 E(n) Equivariant Graph Neural Networks 2024-02-03     ACS Synthetic Biology-2019 Machine Learning Applied to Predicting Microorganism Growth Temperatures and Enzyme Catalytic Optima 2024-01-31     JCIM-2024 TM-search：An Efficient and Effective Tool for Protein Structure Database Search