ACS Synthetic Biology-2019 Machine Learning Applied to Predicting Microorganism Growth Temperatures and Enzyme Catalytic Optima
JCIM-2024 TM-search：An Efficient and Effective Tool for Protein Structure Database Search
Learning sequence, structure, and function representations of proteins with language models
A joint embedding of protein sequence and structure enables robust variant effect predictions
NeurIPS-2023 ProteinGym：Large-Scale Benchmarks for Protein Design and Fitness Prediction
ICML-2022 Perceiver IO：A General Architecture for Structured Inputs & Outputs
ICML-2021 Perceiver：General Perception with Iterative Attention
ICLRw-2023 Enhancing Protein Language Models with Structure-based Encoder and Pre-training
Bioinformatics Advances-2021 Light attention predicts protein location from the language of life
ICLRw-2022 Convolutions are competitive with transformers for protein sequence pretraining