PaperNote (Total 10 articles)
Nature Communications-2024 PLMSearch：Protein language model powers accurate and fast sequence search for remote homology
eLife-2024 Sensitive remote homology search by local alignment of small positional embeddings from protein language models
Bioinformatics-2024 Embedding-based alignment：combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone
Nature Biotechnology-2024 Protein remote homology detection and structural alignment using deep learning
Fast protein structure searching using structure graph embeddings
ICLR-2023 SaProt：Protein Language Modeling with Structure-aware Vocabulary
Nature Biotechnology-2023 Fast and accurate protein structure search with FoldseekFast and accurate protein structure search with Foldseek
ICML-2021 E(n) Equivariant Graph Neural Networks
ACS Synthetic Biology-2019 Machine Learning Applied to Predicting Microorganism Growth Temperatures and Enzyme Catalytic Optima
JCIM-2024 TM-search：An Efficient and Effective Tool for Protein Structure Database Search