PaperNote (Total 10 articles)
Learning sequence, structure, and function representations of proteins with language models
A joint embedding of protein sequence and structure enables robust variant effect predictions
NeurIPS-2023 ProteinGym:Large-Scale Benchmarks for Protein Design and Fitness Prediction
ICML-2022 Perceiver IO:A General Architecture for Structured Inputs & Outputs
ICML-2021 Perceiver:General Perception with Iterative Attention
ICLRw-2023 Enhancing Protein Language Models with Structure-based Encoder and Pre-training
Bioinformatics Advances-2021 Light attention predicts protein location from the language of life
ICLRw-2022 Convolutions are competitive with transformers for protein sequence pretraining
Protein generation with evolutionary diffusion:sequence is all you need
NIPS-2022 PEER:A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding