Fast protein structure searching using structure graph embeddings

Apr 27 PaperNote BI Comments Word Count: 826(words) Read Count: 3(minutes)

ICLR-2023 SaProt：Protein Language Modeling with Structure-aware Vocabulary

Apr 4 PaperNote BI, cs.Transformer Comments Word Count: 1.1k(words) Read Count: 3(minutes)

Nature Biotechnology-2023 Fast and accurate protein structure search with FoldseekFast and accurate protein structure search with Foldseek

Feb 12 PaperNote BI Comments Word Count: 2k(words) Read Count: 7(minutes)

ICML-2021 E(n) Equivariant Graph Neural Networks

Feb 5 PaperNote BI, cs.GNN Comments Word Count: 931(words) Read Count: 3(minutes)

ACS Synthetic Biology-2019 Machine Learning Applied to Predicting Microorganism Growth Temperatures and Enzyme Catalytic Optima

Feb 3 PaperNote BI Comments Word Count: 816(words) Read Count: 3(minutes)

JCIM-2024 TM-search：An Efficient and Effective Tool for Protein Structure Database Search

Jan 31 PaperNote BI Comments Word Count: 592(words) Read Count: 2(minutes)

Learning sequence, structure, and function representations of proteins with language models

Jan 2 PaperNote BI Comments Word Count: 1.2k(words) Read Count: 4(minutes)

A joint embedding of protein sequence and structure enables robust variant effect predictions

Dec 31 PaperNote BI Comments Word Count: 1.2k(words) Read Count: 4(minutes)

NeurIPS-2023 ProteinGym：Large-Scale Benchmarks for Protein Design and Fitness Prediction

Dec 30 PaperNote BI Comments Word Count: 360(words) Read Count: 1(minutes)

ICML-2022 Perceiver IO：A General Architecture for Structured Inputs & Outputs

Nov 26 PaperNote CL, CV Comments Word Count: 1.8k(words) Read Count: 6(minutes)